PhysiCell Studio

PhysiCell Studio is a graphical tool to make it easier to create a PhysiCell model.

Note

This readthedocs documentation is under active development.

Contents

• Introduction
  • Installation
    • Galaxy tool (zero install)
    • Desktop tool
  • Running
• Guide
  • Running
  • Overview
  • Sample model: virus-macrophage
  • Config Basics
  • Microenvironment
  • Cell Types
    • Cycle
    • Death
    • Volume
    • Mechanics
    • Motility
    • Secretion
    • Interactions
    • Intracellular
    • Custom Data
  • User Params
  • Rules
  • ICs (Initial Conditions)
  • Run
  • Plot
    • Plot options
    • Population plot
    • Plot cells’ scalars
    • Plot 3D
• Galaxy
  • Initial comments
  • Register for a Galaxy account
  • Login and start PhysiCell Studio
  • Studio GUI settings
  • Studio overview
  • Reconnect the Studio session
  • Saving your project
  • Loading a project
• Gallery
  • template
  • biorobots
  • cancer biorobots
  • heterogeneity
  • virus-macrophage
  • interaction
  • worm
• Publications
• Funding